NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211700_1028935

Scaffold Ga0211700_1028935


Overview

Basic Information
Taxon OID3300020251 Open in IMG/M
Scaffold IDGa0211700_1028935 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000519 (ERX555940-ERR599040)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_076
CoordinatesLat. (o)-21.0675Long. (o)-35.3923Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060981Metagenome132Y
F092187Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211700_10289351F092187N/AEKQDAKGDYADEWWCMDCEHGPMDEKDDKCSRCGAKNSQYHGDQELTGWEDEDIESEVEEIW
Ga0211700_10289352F060981GGAGGMVATMTADVKIRIADLERQKIDLNSRIERLSYSGNHQRMLELEQEVWEIEDTIRKLMP

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