NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211685_1000309

Scaffold Ga0211685_1000309


Overview

Basic Information
Taxon OID3300020253 Open in IMG/M
Scaffold IDGa0211685_1000309 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18630
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000751Metagenome / Metatranscriptome907Y
F025069Metagenome / Metatranscriptome203N
F032718Metagenome / Metatranscriptome179N
F034621Metagenome174N
F036311Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0211685_100030916F034621N/AMSNDITEVIDILRRRDFYGAGDCVEIAKGKRQIVTSWSGLKRKVKRTIKAKK
Ga0211685_100030918F032718N/AMIRALSPFYIDTPLVYGGVTCAKYILNVWVWNGDKSTPDSTNSYQITYENTTASTGTHSININAIIQDYIEFKEPTPSLVAGVQVIDGNNQQWVYSYVTYDAVATIQNEATDIMVLGYAYGNEGKNVTSVKNNTLLIPQQYKVNKQGSFVFPIYVPTGLTPQAISIKSYPALTINFTNTPAQSDLSNKVIKYLWIDAAVATNESYIEIIWNGKTTTLDITRECKYTPLNTFFQNKDGALQSFTLFKKQEESINVTDSNFETNRGQASAGFHQFVRYGVQARTTLTAETGWLDEDMNEIVKQILLTERIWSFTGGVYTPLNLKMTSQKFKTRQNDRLINYTMTFEKSYNEINNI
Ga0211685_10003093F025069N/AMYKIIADYMTLGLWGMSMANTITSFDIQSASSIAQLILSVLGIVYLGVKIVNETLNGKVEREGKRIANEINNRELDEEL
Ga0211685_10003094F000751N/AMMQIYKTNFPTEQQGKDYLLNLGVIVEQDGEIVFAPTTAAVVYIGKIVDPTKTTDPDNPIYYSGFAIDVMSSETLDFGTFEVFPADKAAHSFYGWARDAEVPKTQN
Ga0211685_10003097F036311N/AMKIYVDSVTKELVLLNGIEYRYPAYCEIQRQKQGNFIIIKTTNNVAVLDKTIFSDLQNEAGTAYASFAALKTALDSYFDSTL
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