Basic Information | |
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Taxon OID | 3300020253 Open in IMG/M |
Scaffold ID | Ga0211685_1000475 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13067 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (8.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_084 | |||||||
Coordinates | Lat. (o) | -60.3606 | Long. (o) | -60.5096 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010694 | Metagenome / Metatranscriptome | 300 | N |
F014160 | Metagenome / Metatranscriptome | 265 | N |
F015230 | Metagenome | 256 | N |
F052036 | Metagenome | 143 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211685_100047512 | F015230 | N/A | MNDSGDITAKFTATERAIDKLQQPTIKIERTRNAIRETQKRNEGVRAELEAIQKRIKKGYKAIRESSDEQQRIAEAKKEISRLGGLIAWQDNRSKQFKTIIERGY |
Ga0211685_100047519 | F010694 | N/A | MSIPVIFDNPHDFFEEATNQNYTDAHDLFYRSMVEYLLDESIQYVCTFVYNEYDKYNFEPLSDEDEQILSRDALLYFEHIEEYETCQLIFEVLNE |
Ga0211685_100047522 | F052036 | N/A | MELKTALKRLFDKDLDLTTNQIDKLITIIGDHSKHEFNAGFKAAKKPI |
Ga0211685_10004753 | F014160 | N/A | MKTLKDSIQELAAPIIEWESDHDNEVLQQDFVEAQLGAYGLEFSIYASRDVSYSHGTHFETEDVTLGDAHFDIDILAVFDQDFDDIDITDEENDLLVNVIAANYE |
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