NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211685_1000475

Scaffold Ga0211685_1000475


Overview

Basic Information
Taxon OID3300020253 Open in IMG/M
Scaffold IDGa0211685_1000475 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13067
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010694Metagenome / Metatranscriptome300N
F014160Metagenome / Metatranscriptome265N
F015230Metagenome256N
F052036Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0211685_100047512F015230N/AMNDSGDITAKFTATERAIDKLQQPTIKIERTRNAIRETQKRNEGVRAELEAIQKRIKKGYKAIRESSDEQQRIAEAKKEISRLGGLIAWQDNRSKQFKTIIERGY
Ga0211685_100047519F010694N/AMSIPVIFDNPHDFFEEATNQNYTDAHDLFYRSMVEYLLDESIQYVCTFVYNEYDKYNFEPLSDEDEQILSRDALLYFEHIEEYETCQLIFEVLNE
Ga0211685_100047522F052036N/AMELKTALKRLFDKDLDLTTNQIDKLITIIGDHSKHEFNAGFKAAKKPI
Ga0211685_10004753F014160N/AMKTLKDSIQELAAPIIEWESDHDNEVLQQDFVEAQLGAYGLEFSIYASRDVSYSHGTHFETEDVTLGDAHFDIDILAVFDQDFDDIDITDEENDLLVNVIAANYE
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