Scaffold Ga0211685_1000875

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211685_1000875

Scaffold Ga0211685_1000875

Overview

Basic Information
Taxon OID	3300020253 Open in IMG/M
Scaffold ID	Ga0211685_1000875 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7517
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Gammaproteobacteria bacterium MOLA455	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_084
Coordinates	Lat. (^o)	-60.3606	Long. (^o)	-60.5096	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071644	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211685_10008757	F071644	GGAG	VRKLLVEKTRNPRFTGVLIFAGLWNVCLATWALFFTDIFIQVLALEGSGFVMTLGRKVFWTSVGIFGIMFILSGLNNARFRFIIAIAVPGKILAFLGSAIALLAGQAGVGIMFIGLGDLLFTIPFIMYLRATRQFGWI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.