Basic Information | |
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Taxon OID | 3300020253 Open in IMG/M |
Scaffold ID | Ga0211685_1002384 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3330 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_084 | |||||||
Coordinates | Lat. (o) | -60.3606 | Long. (o) | -60.5096 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005720 | Metagenome / Metatranscriptome | 392 | Y |
F051469 | Metagenome | 144 | Y |
F070572 | Metagenome / Metatranscriptome | 123 | N |
F101907 | Metagenome / Metatranscriptome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211685_10023843 | F101907 | AGGAGG | MAYDGTIPAGGHANFVSPNTAQEHGSDGAVDFITVDVLAAGTGEVTHPLAAANTAGLHLIKEAIQNQGVNILGNGVETAAFEHTFMVRRDSLDTISSTTTAAAIQAAIRALNANSKITLTISSATAADRDMGRLSAMA |
Ga0211685_10023844 | F070572 | AGGA | MAITKNNFVLNQNYELIGHEVTILAVDFINTMAAEVNDCSDGTALGGLDLVRKTFEQQGLSILSEGPLTNSGTEKNYLVRKDSIDALAGTLNGLQAAIRALDAAEDTHPNITATITSATVAEKELIVAV |
Ga0211685_10023845 | F005720 | AGGAG | MTTSNATANMSRRQSFHGKGLTFIEMMFDDEMVTAGTTPDTKESVFNEMSKLVGTFGTIVAQSYALGCKATEKDAALATSILEDELCDYYTFMVEGTPGQFNAADSAGDSNFDADQADATDPGVIADAEADIEVEILARIAENDSAGGVHVDVRYLPADGVTSAGGEVVYGFNSARVNA |
Ga0211685_10023846 | F051469 | AGGAG | MIEKFTVEIEVGDRVEAGRLHLSNQTIKAIEVDKWGHPVLVLSSGRKRGLFSCRIKKLIPADVKRVQEPGEILMTKEQWAQAQLVIDEAKAK |
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