NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211586_1005333

Scaffold Ga0211586_1005333


Overview

Basic Information
Taxon OID3300020255 Open in IMG/M
Scaffold IDGa0211586_1005333 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000131 (ERX556136-ERR599013)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2874
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)5.9997Long. (o)73.914Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042384Metagenome158Y
F049043Metagenome147Y
F056677Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0211586_10053331F056677AGGAGMDIYRNQERELKLARKPLIVLEDELWQINQLSRLRKDLRNRKKRLEKVIAVKRLALQAVQEKIEREVDKVNEK
Ga0211586_10053332F049043GAGGMKNDINDLHLRFVQLVMDMKKEGHDPLAIAGCMLAGAVQMYQSELGMQTTSDLLDQIANGSSDDYDIDISTEKETIH
Ga0211586_10053333F042384N/AMVVVMIMILISVRRKKQYIDGDYIMGLMPIYYTTTKMSGKRKSSVRNQRLNKEHEKWLRGMGIDKPWKPKSEKLALSGANRDERYRSVGDGIGNGFVKTTSAISGDYIVGQAYNKGNLVVLSKEDAKDESTGKRR
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