NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211586_1060775

Scaffold Ga0211586_1060775


Overview

Basic Information
Taxon OID3300020255 Open in IMG/M
Scaffold IDGa0211586_1060775 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000131 (ERX556136-ERR599013)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_042
CoordinatesLat. (o)5.9997Long. (o)73.914Alt. (m)Depth (m)80
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007756Metagenome / Metatranscriptome345Y
F054943Metagenome / Metatranscriptome139Y
F094001Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0211586_10607751F094001GGAGGMNELRLPPDTPIQYEEGLWELCTDRAYEMMKHKRQFLNDDIFNYQIEYWTTKIFEANSHLRGED
Ga0211586_10607752F054943AGGAGMRHLIPLTPKQIQIVQASLQLSLKYADSQYIDNVNEIMNEIEDNTRLGGNL
Ga0211586_10607753F007756N/ANVKFEKYGTYTIEATSKENALEIYNDGNYGWEDYTEDFGEFNEVVEDVEEEVFADTQLTLSGVL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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