NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211679_1003902

Scaffold Ga0211679_1003902


Overview

Basic Information
Taxon OID3300020263 Open in IMG/M
Scaffold IDGa0211679_1003902 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000809 (ERX555942-ERR599125)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4447
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-61.9898Long. (o)-49.3613Alt. (m)Depth (m)790
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006198Metagenome / Metatranscriptome379Y
F011620Metagenome / Metatranscriptome289Y
F019388Metagenome / Metatranscriptome230N

Sequences

Protein IDFamilyRBSSequence
Ga0211679_10039023F011620N/AMFDKILQAVLEFFGKKIPEPPTEENNESLEALERIEALDNIGEPS
Ga0211679_10039024F019388AGGAMRTEQNPYLVETKNKQTLKFSKIDADNEAVDFQQTGKDVEVWHDGILQYRLHGIEQGKLF
Ga0211679_10039026F006198GGAMEVELDVECNNCNAKYTMMYEADDIQSRQEEHAFHCSFCGILMEPYYDEFFEED

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