NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211526_1000015

Scaffold Ga0211526_1000015


Overview

Basic Information
Taxon OID3300020264 Open in IMG/M
Scaffold IDGa0211526_1000015 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44567
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0342Long. (o)64.5162Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020526Metagenome / Metatranscriptome223Y
F025996Metagenome199Y
F039094Metagenome / Metatranscriptome164Y
F082531Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0211526_100001510F039094GAGMTQEKKVSLNVQEIGVLLSALQLLEFGDENMIAKHYGSAPSLYNRLKEIYDEMDDSICGVENDPICEPSF
Ga0211526_100001511F082531AGGAGMKWMTQFVELKMTQSVNPLSELYMNDQDIEQFIKAFDDFMQHAETEIDSHQKWKEAERYKDEFYERKAAELEVTVDYYLEEFVQ
Ga0211526_10000153F020526GAGMIEFTDDQRVEMIENQCEHIFELAGTYTEMGTEEDKENVRALYEEYAEWLDTYTCVEGAPEEYITAWAPNLLGSAG
Ga0211526_10000158F025996N/AMTPQRELRIGELDKSIIELSKRKLKLLQEVNDINETISFLRQQQEQLINV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.