NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211526_1001661

Scaffold Ga0211526_1001661


Overview

Basic Information
Taxon OID3300020264 Open in IMG/M
Scaffold IDGa0211526_1001661 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3976
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0342Long. (o)64.5162Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002344Metagenome / Metatranscriptome568Y
F005351Metagenome / Metatranscriptome403Y
F009959Metagenome / Metatranscriptome310Y
F050305Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0211526_100166110F009959N/AMTEQEVIDRVCDRMVITLYNELDYYMFEELGYTETNDKYVKEADRLARLIIKEITK
Ga0211526_100166113F050305N/AMNNLNTTIDKIAMSEFDMHYYQLSDNEKQLCHSEMVNNPKWLKKDWEDPMWTMAAKWEAGLPIYKNYTN
Ga0211526_100166114F005351N/AMYNVNNPSNWSWSKAFDEMAKTVHKAELEQQIINHLSNYSGNPKWTELTKDQQEDHYEILTQIL
Ga0211526_10016613F002344AGGAMLYDKLKPHIKDKLKSQAEEYSVSISNIFNTLKQKNSYTDLTIEEIRTICTFGDVWYYDLTQKDIIWGDWLTK
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