NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211526_1003084

Scaffold Ga0211526_1003084


Overview

Basic Information
Taxon OID3300020264 Open in IMG/M
Scaffold IDGa0211526_1003084 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2864
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0342Long. (o)64.5162Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002164Metagenome / Metatranscriptome588Y
F040719Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0211526_10030842F040719N/AMTNKIKPIFNSFQEYIEAEDMVFKTLQGNIETVTIGSKDIE
Ga0211526_10030843F002164AGTAGMKEFIKKRRCLFHKRYVAKRMAELQNEIFQEAMDTGLVNLEKRKQLLKYKEHLRNL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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