NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211526_1024384

Scaffold Ga0211526_1024384


Overview

Basic Information
Taxon OID3300020264 Open in IMG/M
Scaffold IDGa0211526_1024384 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000066 (ERX556116-ERR599158)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1003
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0342Long. (o)64.5162Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004493Metagenome436Y
F018289Metagenome236Y
F037208Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0211526_10243841F004493AGGAGMETKFTKNKELGFTDNQWGQLIEANGLLIMWFIEWNNKDWHGTPDMSIMEFFTKKYNQSAGCNPWPIKGAVSLDGKFVSTHQDDEDLEPYFMIDTDDGVGY
Ga0211526_10243842F018289AGGAGGMTEFTRSQLNELRKQLQAALDGAVDTENITADIKIEVGNCSYSGGEATFKVKCILKGAKTREQIDLEFYAELHGIDTTAIAKLQGEDMSIIGYKSRARKKPWILQRLRDGAEFVCSDHTAKQFFKKREEIA
Ga0211526_10243843F037208AGGAGGMFVLFATKPLNDGTKGFRFNFLGNKGVYRKRKVINRYGKSTGDVMTGYHFGKRSVYLQQATPRRKLYHFAG
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