NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211519_1006432

Scaffold Ga0211519_1006432


Overview

Basic Information
Taxon OID3300020266 Open in IMG/M
Scaffold IDGa0211519_1006432 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3313
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012719Metagenome / Metatranscriptome278Y
F027814Metagenome193N
F031527Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0211519_10064326F031527AGGAGMKKKIYEYMTIVFAVMGTLSMVSAVGAIETDQYLLGASAVCVGFASFVMTLFSQQLYSEA
Ga0211519_10064328F027814GGAGGMSKLKFNDLPKILDWIKEPSHAGHLFIVEQTLKSVKEDQFKVGTKVSFGRPNGRKHTGVVIKLGPKKAVVETANGRYGQLGKWRVPYDLMNVVEE
Ga0211519_10064329F012719AGGAMIGVGANSLAIYPLGPLATLAGGLTWLIVSIMWKEAALITTNLVLSAITIVGLVYTYIH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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