NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211519_1030892

Scaffold Ga0211519_1030892


Overview

Basic Information
Taxon OID3300020266 Open in IMG/M
Scaffold IDGa0211519_1030892 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1148
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3599Long. (o)19.4084Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003834Metagenome / Metatranscriptome466N
F014069Metagenome / Metatranscriptome266N
F026154Metagenome / Metatranscriptome199Y
F038858Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0211519_10308921F003834AGGAMSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKISKMHDEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYSGPRGKAIQMLDMSKEYCKNLLNAGQSLSTVWGVLDQEMGKEKINTNTIP
Ga0211519_10308922F014069AGGAGGMETVKAPISERVATKVMPLTKWFVEQYFQTYELMSSDPRFKKLPAYNQTSCIATVIIATNNALDKNRDARKSAETLQDISKATEERKAVNE
Ga0211519_10308923F038858AGGAGMRIEKIGEQLVKAFTLPIRVCVGIYNCVEKATPDTLEMPFEIKRKEETNGNSKSTD
Ga0211519_10308924F026154N/AIRFVTYTIGGIAIRKSWNWLTTDVDPIPYTKEFEEEYAQTKAKYIRLTKLKEKHDAYRKNRRTIS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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