NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211648_1000581

Scaffold Ga0211648_1000581


Overview

Basic Information
Taxon OID3300020267 Open in IMG/M
Scaffold IDGa0211648_1000581 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13100
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (64.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0663Long. (o)-84.5304Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015078Metagenome257Y
F057293Metagenome136Y
F060050Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211648_100058114F015078GGGGGMTTITEQKFTCNVNYQFDISLDDLRCLFCTMGQGANYWATEVTVGNIIEEGDEDGNVWYKDDQDYQFEGCCAWLMDLTLDSPITVKDMEEDTHLFKVQDVLTTIEKIICGKTDLNKHDCCEIFEAFATNNLGLIDAGIADSILQIMTYDSLVYG
Ga0211648_10005815F057293AGGAGMRKHTITVYTNDEYSLYDILQEVRSEIDRKVFDRDNIRQRKFSGTWKEEVTSSSPLADRYGYRYETVAKWESNVVPDAEFIRFQKEKN
Ga0211648_10005817F060050GGAGGMTDTQKLKRLAFLANLSYSDHTSEDWEEELRLECELQDHPQYKSYLDQ
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