NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211648_1010709

Scaffold Ga0211648_1010709


Overview

Basic Information
Taxon OID3300020267 Open in IMG/M
Scaffold IDGa0211648_1010709 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000927 (ERX556026-ERR599108)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2166
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.0663Long. (o)-84.5304Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001479Metagenome / Metatranscriptome687Y
F012353Metagenome / Metatranscriptome281N
F021120Metagenome / Metatranscriptome220N
F034958Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0211648_10107092F021120AGGAGMKLFTIQFTDKELTELENVLDQHVYAEAIENKGSEGTIGTIHNRILDVHYQNSDGLVPVEEVTHKHYRKDLDLL
Ga0211648_10107094F001479GGAGMSKEMLFLCDVLTDWCKKNKLPHRCASDLLYMEDTKGRLTGNQVYWLENFISTWDIINQT
Ga0211648_10107095F034958AGGAMKKKTLVQQKKDNLEFCFETLGLNKKQTKEILAATDELGVNVEYFANEFMETSSKEVHYSHYLNIAEFNAMFWEW
Ga0211648_10107096F012353N/AMKLMLYTTGEWKVDPNKDITYPLVRWLFRLFPILDGSDIEINQVDLGNEFAYGFCQEDDGEFLIHIHNRMDLREYVKTIIHEITHVRQTLDGITDSNAREDEAYYLEEQLSKAFWDRLKSGTSNVES
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