NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211484_1007885

Scaffold Ga0211484_1007885


Overview

Basic Information
Taxon OID3300020269 Open in IMG/M
Scaffold IDGa0211484_1007885 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2386
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_032
CoordinatesLat. (o)23.4017Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024809Metagenome204Y
F038719Metagenome165Y
F057382Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0211484_10078852F057382AGGAGGMSKNDLTKAELKQLISTIVFFQLGARTKELKTIKLKLKNQLKEMESK
Ga0211484_10078856F024809N/AMNYSQKVLFDDWIKRCPIDGVFVDEPVSEVQMDDGRVGYLVKIFLTIDKEDWEQNQSPLGISENSENLPSQDRFEGA
Ga0211484_10078858F038719N/AGGYSMDLKTREKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKAHDDLDNFQFGVTRKIINDAPTRQSNDMWS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.