NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211671_1002563

Scaffold Ga0211671_1002563


Overview

Basic Information
Taxon OID3300020270 Open in IMG/M
Scaffold IDGa0211671_1002563 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001029 (ERX555928-ERR599042)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4013
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_098
CoordinatesLat. (o)-25.859Long. (o)-111.6989Alt. (m)Depth (m)188
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043984Metagenome155Y
F054943Metagenome / Metatranscriptome139Y
F059069Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0211671_10025633F059069N/AMRINQYVVYTSPVKIVNDFTEACKLADDYFTETGYIVAVEETNPVVYPEYEVA
Ga0211671_10025635F054943GAGGMRHMIPFTKDQLQIIQASLQLSLKYADSQYIENVDEIMKEIEDNTRFS
Ga0211671_10025638F043984GGGGGMSMSISEMYQEMIDQYTEMYMYQKAHRQRGVRRDTNEDILDDMSAIEVELEYTNES

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