NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211671_1011633

Scaffold Ga0211671_1011633


Overview

Basic Information
Taxon OID3300020270 Open in IMG/M
Scaffold IDGa0211671_1011633 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001029 (ERX555928-ERR599042)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1773
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_098
CoordinatesLat. (o)-25.859Long. (o)-111.6989Alt. (m)Depth (m)188
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021120Metagenome / Metatranscriptome220N
F028529Metagenome / Metatranscriptome191N
F034958Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0211671_10116333F028529GGAGGMKLSKFLTENLNDKTVTLTLTFDERSELLRHLEMFDENIDQLHPLVESVQDKLLGID
Ga0211671_10116335F021120GGAMKVFTIQFTENELTELENVLDQHVYAEVIENKGGEGIIGKVHNRILDVHYQNSDGLVPLDKVAPIHYRKDLDLL
Ga0211671_10116338F034958AGGAMKKSKVDQMIDNLEFCIETIGLNDEQTGEVLAATNELGVNVEYFANEFMETSSVQVHQSDYLNIAMFNAMFWEF
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