NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211631_1027778

Scaffold Ga0211631_1027778


Overview

Basic Information
Taxon OID3300020271 Open in IMG/M
Scaffold IDGa0211631_1027778 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000678 (ERX556013-ERR599096)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1148
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.978Long. (o)-139.2432Alt. (m)Depth (m)600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0211631_10277781F027536GGAGGMRVSPDGWRYKVTPIDRVINDCRRRADDAWWDGNDEEARLHEQEQKLYEKDKEEGVLWVPNF
Ga0211631_10277782F015102GGAMQRESDYAEDKNAPFDDVTHWVGNLPDKDNDSTKRTLKRYSWWQTQSNILRKKLGMETKRKK

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