NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211566_1019727

Scaffold Ga0211566_1019727


Overview

Basic Information
Taxon OID3300020272 Open in IMG/M
Scaffold IDGa0211566_1019727 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001971 (ERX556120-ERR599127)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1640
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.1468Long. (o)-116.6821Alt. (m)Depth (m)375
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F012582Metagenome / Metatranscriptome279Y
F037260Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0211566_10197273F012582N/AMTEFHKKLKHLSATMIHWAEENKIRTKRNGNYEIPQRNGIDWKFDFKFVTKLDSMLADGLDDKLKKSEMKMCNELYSYYSQCYMMK
Ga0211566_10197274F003091AGGAGMSMLPRKPITKPGEGNRTQEQKYLSQERYLEERYQISLGLKGPKRLEGESHEDFQTRRKAENGLLHEYSRGVWMTDGKCTALNPPCRNCE
Ga0211566_10197275F037260N/AMAKKKKSIPFHVKHNYKQWTSDQGYKFWAKDEEDAKLYLEKTEGNLGSLKEVEAKSV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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