NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211566_1039383

Scaffold Ga0211566_1039383


Overview

Basic Information
Taxon OID3300020272 Open in IMG/M
Scaffold IDGa0211566_1039383 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001971 (ERX556120-ERR599127)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.1468Long. (o)-116.6821Alt. (m)Depth (m)375
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F012582Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0211566_10393833F003091AGGAGMLPQKPITKPGEGKQREKQVTRERYLEERYQISCGLKGPKRLEGESFEDFQIRRKAENGLLREYLRGVWVKNEE
Ga0211566_10393834F012582N/AMTESQKKLKHLRTTMIQWADENKIQSKKNKQYHVIPQRNGIDWEEDFKFVTKLDGMLSDGLDDKLKKSEMKMCNELYRYYSQCYMMK

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