NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211566_1056055

Scaffold Ga0211566_1056055


Overview

Basic Information
Taxon OID3300020272 Open in IMG/M
Scaffold IDGa0211566_1056055 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001971 (ERX556120-ERR599127)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)853
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.1468Long. (o)-116.6821Alt. (m)Depth (m)375
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006865Metagenome / Metatranscriptome363Y
F029469Metagenome / Metatranscriptome188Y
F043443Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0211566_10560551F006865N/ARDVLYEVLGIMNVERSNDKGTEYWKERWGANSVLRNGNDYYYCRTIINAEFEDI
Ga0211566_10560552F029469AGGAGMSSKPEHTTYFREIIRRLKEMEIEFKKAPDPDKEVYGEMDDKIELMELPFPPEMFDRLSTDEKETLFIWLNRRNMPQA
Ga0211566_10560553F043443AGGLNEKLLELKRKKLQRQILYLRTDLEETTFIFQDCLVEFEGEFRDYFKNESAKDHKKVTTDPPEFDIPREDVNIVFKKIAQKTHPDKLVKEDTLSSTYKEKVDMYKEALGSVENKDWSRVIEIAMELGIDVSDIKNDD
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