Basic Information | |
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Taxon OID | 3300020272 Open in IMG/M |
Scaffold ID | Ga0211566_1056055 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX556120-ERR599127) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 853 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_137 | |||||||
Coordinates | Lat. (o) | 14.1468 | Long. (o) | -116.6821 | Alt. (m) | Depth (m) | 375 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006865 | Metagenome / Metatranscriptome | 363 | Y |
F029469 | Metagenome / Metatranscriptome | 188 | Y |
F043443 | Metagenome / Metatranscriptome | 156 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211566_10560551 | F006865 | N/A | RDVLYEVLGIMNVERSNDKGTEYWKERWGANSVLRNGNDYYYCRTIINAEFEDI |
Ga0211566_10560552 | F029469 | AGGAG | MSSKPEHTTYFREIIRRLKEMEIEFKKAPDPDKEVYGEMDDKIELMELPFPPEMFDRLSTDEKETLFIWLNRRNMPQA |
Ga0211566_10560553 | F043443 | AGG | LNEKLLELKRKKLQRQILYLRTDLEETTFIFQDCLVEFEGEFRDYFKNESAKDHKKVTTDPPEFDIPREDVNIVFKKIAQKTHPDKLVKEDTLSSTYKEKVDMYKEALGSVENKDWSRVIEIAMELGIDVSDIKNDD |
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