NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211629_1104238

Scaffold Ga0211629_1104238


Overview

Basic Information
Taxon OID3300020273 Open in IMG/M
Scaffold IDGa0211629_1104238 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000678 (ERX556047-ERR598999)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)571
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.978Long. (o)-139.2432Alt. (m)Depth (m)600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F022974Metagenome / Metatranscriptome212Y
F065850Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0211629_11042381F065850GAGGLKIVSTKQFWWRFNHLKRNGGEITVTDRTRPFDLKEWNRIESL
Ga0211629_11042382F022974GAGMENNETYYIAKLSKEGEFLSSDIFETLTAARLWAMKETKLLVSDSFLKKCKADDVVVEIDKHFFGYEISSEELLKNSVRVS
Ga0211629_11042383F000615N/ANIVSGLERPENIMCRIRLFYECSDGTMGFAEHVMRYEDDIVGFIKHWKTGGRMVITEHIDLV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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