NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211658_1001878

Scaffold Ga0211658_1001878


Overview

Basic Information
Taxon OID3300020274 Open in IMG/M
Scaffold IDGa0211658_1001878 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5835
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028003Metagenome / Metatranscriptome193Y
F059330Metagenome134N
F077798Metagenome117N
F081356Metagenome / Metatranscriptome114N
F085559Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0211658_10018782F059330N/AMTDKQIIEQTKDWLWELTEPREEFSGFGICPFLKKELTNDDMKFVILRGQDDSYGPNFKKGLDDWIKENKYNSILFICIGDIWEHIERKDYQLKLQNLMKNNGYQDYKALCFSPYEDRTAAGVKTRAGSPYFLINIMSSTDLGKAHQSIVKTKYFDNFTKQELIDIKIYGKNTKKALDINKKN
Ga0211658_10018784F085559AGGAGMTMNLQQQSDECGYALEAFGKVLKNNNIEVEGKPNIELIMEYQKEYRKIEVRNREIENEVNFNFIQSEKSEAYKEWENSWIDWVKSKLRFRRNEN
Ga0211658_10018785F028003N/AMKISQASGFDKYIIMCDKGQGKLVSDYPSYLKFKEVQNALVKISQTPGKTYIFNGEVHEKGMTCSQADRVLDNIFNCKTNMEMISLIRKVARQIGFHEMTLPGKIKWGM
Ga0211658_10018786F081356GGAMGNVKEGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKI
Ga0211658_10018789F077798N/AMTDINKKFRMIIENEDLFKSNPEAMLRLKYLVDNKKSFKNITKEEIEALYIYLNRHNIAN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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