NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211658_1008199

Scaffold Ga0211658_1008199


Overview

Basic Information
Taxon OID3300020274 Open in IMG/M
Scaffold IDGa0211658_1008199 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2569
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000896Metagenome / Metatranscriptome845Y
F030122Metagenome / Metatranscriptome186Y
F040642Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0211658_10081992F000896AGGAGMTNKINLVINLSILALLIYLAVSVKQLQDKVFPDPNVMIPLVNDHNSKQELEYNIREFLNHMLTQAIQEQENQ
Ga0211658_10081994F040642AGGAGMNRVQWIMKEIYRDGRKNFKWILKGVAITLIMIAVIKILIAFDMRDWFLPIVAIVVPLGMLYHWYSMSYDQEQKNLINKLKDLND
Ga0211658_10081999F030122AGGAGGMQFYPKDKDPRLDERSARFHARVLKQDLATLPYVPNTQNRDINIARASTYVTWDSDKDMWSEVDHLMMNFYINAKTTD
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Institute for Fundamental Biomedical Research
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