NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211606_1000287

Scaffold Ga0211606_1000287


Overview

Basic Information
Taxon OID3300020278 Open in IMG/M
Scaffold IDGa0211606_1000287 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25508
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_124
CoordinatesLat. (o)-9.1552Long. (o)-140.5284Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F018479Metagenome / Metatranscriptome235Y
F021314Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0211606_100028714F018479AGGAGMANIGNLVDRTFREYLEPMDDLVSYTTLSTGVNDSITSIVFDGDLLSVEEEDALDKGTIIEINQELMICTDLNAVTNTITVKRGMKGTTATAHTAGDLIKISPPFPRKNVFDAVCDQIKNLYPTLFAVETKSVTAKTGYIPMDGANDNYIVAPISAISQMTDFAAGSDETGIVYQGVAVELVDLPNPFTYRDSDGVSQTITYSNNGPNKVNALQVYGVSSGHTVFVTFKKKFIEPTAEADTLATVGLENEYEPIIMAGVAAQLIAGRDIPTATADYISDQLATSTFPVNSASNIRTSLLRYQSDLIEQARKDLRARYPEPVALNKITYA
Ga0211606_100028715F003693GAGGMIKSKLALIDISSDNSNSLGVSTDGMLLCGVQFPAAMTGSNITFDFSFDNLAYVDVKETDGTETSVTVSTGDLVRLDPSGFAFASNGFLRVTSDGNEAADRQIILHFRHS
Ga0211606_100028717F021314GGAGMEENKLDQATEDAIEEAVESNDNIKQLRDEFKKLKAENKAFKAQAMNTALESLGLQSDKGIGKAVTKLYDGEMNVTDIKDFVNNEFGDAINAEPVVEDKITDNVTEAQGRVEQLNKLGVNAEPVDISQEFNKFINDSNTSTRDSINAKLRMIDTLNEQDKR
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