NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211591_1000057

Scaffold Ga0211591_1000057


Overview

Basic Information
Taxon OID3300020280 Open in IMG/M
Scaffold IDGa0211591_1000057 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42935
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (69.49%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.895Long. (o)-142.6228Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003196Metagenome / Metatranscriptome501Y
F003423Metagenome / Metatranscriptome487Y
F014085Metagenome / Metatranscriptome266Y
F020902Metagenome / Metatranscriptome221Y
F021540Metagenome / Metatranscriptome218Y
F022423Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0211591_100005716F020902N/AVLLEDNVDYIDDAFNEIIYNEFGVIDELDILSEQVNHIIQPTPGIIILITQEFYGKE
Ga0211591_100005723F021540GGAMKVIDKIYDAVNGDKYVIETKQCWHCGKTGKVEIFTQEMFFLNQGYHVQEAVKSLNRDYREMLVTGIHPNCWIEMFGNEEE
Ga0211591_100005738F022423N/AMPDLEFIAKTIHTMTENVQNKETLHKIMGTANEYAKTMKFPKSKTEWSDEQLDKYFNMIEKLVDMPVEYTQNDFDSLSLMDKLKAVGLEATDKTDGLQQPGGLVGEVVNQMEQQNKYRDDLKCPYCQAMVYDNRNSKKSDKSPDFTCSTNDPVVCGGHTGKWRKSWWLDNTDIPEEWGI
Ga0211591_100005744F014085AGAAGMSLSEIREEAMQRAGGKCEWPYCNDNKWLELAHIQGIGMGGNPKRKFDINNVCILCKHHHDVYDGRQRVGASVAYRELLMGYLNRERLIT
Ga0211591_10000577F003196AGGMQLQKEVLIDISANANNSSAAQCDGLLLSGVVFPAAMTGSTITFDFSFDGTTWYDVVETDGTEVSYAVSAGNVVRVDPSGWAFAATGFLRVVSNGSEAADRTINLIFKQS
Ga0211591_10000579F003423GGAGGMEEFDAPGEHGVKQMRETIDRKDDTIKKLEAELASYKDKEIDNVFGTLGLSTDKGFGKALKQVYDGPVNTEAVAQFAKDEYGFEPTGTVEVTPQSEPEQVVQDDARSRVAALDANSTSDVPLDVNQQLAQVLKGASVKDSLRAKLSIMDDVKKNK
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