NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211483_10022984

Scaffold Ga0211483_10022984


Overview

Basic Information
Taxon OID3300020281 Open in IMG/M
Scaffold IDGa0211483_10022984 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2064
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_032
CoordinatesLat. (o)23.4017Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000802Metagenome / Metatranscriptome885Y
F003928Metagenome461Y

Sequences

Protein IDFamilyRBSSequence
Ga0211483_100229841F003928N/AMFTTTAYNTLGEVQETETQNDSWAATEMCLDMSMLYGYAETTDLWGRHYGEYGDRPNALGMRVY
Ga0211483_100229845F000802N/AMTIDEYKDLLLEDEINIGYDVEEDDLPEDIEEDSWIDGLLTSGFHAVNDDELFGEEITGYSLY

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