NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211483_10102172

Scaffold Ga0211483_10102172


Overview

Basic Information
Taxon OID3300020281 Open in IMG/M
Scaffold IDGa0211483_10102172 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)946
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_032
CoordinatesLat. (o)23.4017Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005670Metagenome / Metatranscriptome393Y
F018197Metagenome236Y
F105361Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211483_101021721F105361GAGGMNKRATENNLNREQFERLKELYVETIVDSMSYEDLLDYVKTDYYNSLDKYNEFDLFEDIKYTLDEDFLNEFIKQIKGKITD
Ga0211483_101021722F018197N/AMNNELLKETNIKEWTNMPPISEELYQELVKEFNNERKYFFNDSYNLED
Ga0211483_101021723F005670N/AMKLLTRREYNLILRALDSYDVFMNKKEKELRDDLEDKLYYNLYNPKDGVAQTDVNLPALYDIKTEKDTSEDNVIKSLNFRS
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