NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211667_1018953

Scaffold Ga0211667_1018953


Overview

Basic Information
Taxon OID3300020282 Open in IMG/M
Scaffold IDGa0211667_1018953 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1810
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052545Metagenome / Metatranscriptome142Y
F071138Metagenome / Metatranscriptome122N
F089399Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0211667_10189531F052545AGGAMEKARVWAILFRMSTESSLMIRTPFDPKTFKNSPDDQLDAGAWCLGRMGGSWIPAMFICGTQSEAEGIKEELLERMHRD
Ga0211667_10189534F089399AGGAMNFNEICLDAELTRDEIYGLAVGDETIFYTQDDEDIFKQEQESEYRRLKRIKQENIENYRKQVDATGEFDYNGHTDEIALHTNQQTFVGAMVKEGIIEFDDKF
Ga0211667_10189536F071138AGGAMFKVIVSDVECFGKLGYFTTRSVAFGKSPKQAYAKLRRRGEHTVSGGHPEGYGGVPVLQMRRLEKDGEMLSEVWD
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