NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211667_1063543

Scaffold Ga0211667_1063543


Overview

Basic Information
Taxon OID3300020282 Open in IMG/M
Scaffold IDGa0211667_1063543 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)916
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033764Metagenome176Y
F100990Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211667_10635434F100990AGGGGGMGKNYDYTHIFDGVYTPVTEYTPLPMTEQLFWNRVGWLEQAMIRADNFEFRLLWFNKLQELMKLQP
Ga0211667_10635436F033764N/AVNNIGTKWTNGKSKKGQILDSLDGIDGIDLKKLVPLLEQWFETVTGGWSDKKVELVINVKENER

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