NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211619_1003808

Scaffold Ga0211619_1003808


Overview

Basic Information
Taxon OID3300020288 Open in IMG/M
Scaffold IDGa0211619_1003808 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000161 (ERX556132-ERR599045)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2880
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_045
CoordinatesLat. (o)0.0033Long. (o)71.6428Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016980Metagenome243Y
F019152Metagenome231N
F053344Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0211619_10038083F016980AGGMKYKELLEQLRELTPDQLELETLVFIRDKEKFVRLNNGLYFVTEFDEYDQDLETDQPYFS
Ga0211619_10038084F019152AGGMEHTKGILLECNLSEEEINTVIEALSRDYVENDPEILEKEYQLQGKLREIISTFYTKIDAQKFTQMQVQSIKGSTL
Ga0211619_10038087F053344AGGAGGMNRKVFPLELYRRVLKRAKLDEDFYHAIISEYIELLNEHHEIDNLEESVTDWESENPSYIDSLLTTGD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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