Scaffold Ga0211621_1000545

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211621_1000545

Scaffold Ga0211621_1000545

Overview

Basic Information
Taxon OID	3300020289 Open in IMG/M
Scaffold ID	Ga0211621_1000545 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556122-ERR599019)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9883
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (85.19%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_048
Coordinates	Lat. (^o)	-9.4112	Long. (^o)	66.3281	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060813	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211621_100054516	F060813	N/A	MKSVKYIVYTQNNKMGKVGEFDNAKDAVKWAKDNVYAFDYVKEKKDEWEDLFFELLVGIGKGDVKYV

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