NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211520_1002941

Scaffold Ga0211520_1002941


Overview

Basic Information
Taxon OID3300020294 Open in IMG/M
Scaffold IDGa0211520_1002941 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3074
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014328Metagenome264Y
F045856Metagenome152N
F048572Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0211520_10029411F048572N/AMRFAKYFDKDLYSKWHRLWDGIAMCDIDSVEICKNKGCWKPLAI
Ga0211520_10029414F014328GAGGMTDVDMFKDYTGKIKMLKKKLRISKNISCDLEIIIESQKKEIDTLKQIIAIQELQMDTPNKTRTNKIFQLKSILKKCRERGKFDLAVKLTNKYYINEDILKESYYD
Ga0211520_10029416F045856N/AMTLKEWMKKNKLSCSETAKKVGIHNINPSTNIYRYKEGQRIPRKSEMKKIYLGTNKEVQPNDFYDFI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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