NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211657_1054823

Scaffold Ga0211657_1054823


Overview

Basic Information
Taxon OID3300020298 Open in IMG/M
Scaffold IDGa0211657_1054823 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX556051-ERR599128)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)793
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010479Metagenome / Metatranscriptome303Y
F017398Metagenome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0211657_10548231F010479AGGAGLKSYLDLLLTEFAQTSASNLVFDVASQGRASSALKIPISGPMFKRIWPDTIRTTVFHVLRAENLYELKKLEGGKKTISAFFSMMSRYLESGIAGGGGVVAELEADILVSAKDDIMSKVDKKGRRWVALDWFANAQS
Ga0211657_10548232F017398N/ASLIIADYIDGVNAILKKHKKDIQGAVHGYYVRRGTVAVKHPSSGRMVGGDSELSEWNVYDEQVVDKIKIIKVHTFNSRQFELDWVKDSVIPRLGKIPHTHWVNGARDLSNYVTKIAQTEVQALRRSKG
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Institute for Fundamental Biomedical Research
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