NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211615_1000175

Scaffold Ga0211615_1000175


Overview

Basic Information
Taxon OID3300020299 Open in IMG/M
Scaffold IDGa0211615_1000175 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8000
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043887Metagenome155Y
F060050Metagenome133Y
F091884Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211615_100017515F060050AGGTGGMTDTQKLERLAYLADLPYCKHTSEDWEEELRLECELQDHPQYISFLNP
Ga0211615_100017516F091884AGGMCYTGLRRCYTFNCRLLISINKDMANSKSKKSTKKVEYKLQERQVIAFCWVGHGTYTWSIGYEPNIVHATKCVRKAKRDYGLKGWQIIPVSIFDIEDTEHWAFDGGTLVDTDKQDKESEAYKNGEIYNQWRGCPPLKKIEDLEVVS
Ga0211615_10001756F043887GAGGMKEQTLLKIARYQCQLAELERQWWFEGLEDKFYRINYDRITNAIKELEND
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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