NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211615_1000695

Scaffold Ga0211615_1000695


Overview

Basic Information
Taxon OID3300020299 Open in IMG/M
Scaffold IDGa0211615_1000695 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4206
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044142Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0211615_10006955F044142N/AMENIFLDFNRIQILTPEETDDVFNEIISMRKLWMDRPNWHPAFEITGSDNDIESYMHYYTMGATLYMDARDRGWNFYTKLYKMYNKVLWKRLGWLYERFLVEIQKEIGEAEYTEGLGLPGFHIYEFDDATSDIKHHRCLHYDAQWWYGKKFFKERFKKVDFRNQLSFTFSIKLPHSGAGIALWNLPEKHHRKANDIKYMIYRDIIGKYENVEYVKDIQKLKNLEEPWKYDELFNATGDLEKYIPIVIPHIEGYSFWYSGMIMHQMILGHDFKKGDYRITFQGHGLKCDGKWRLWW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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