Basic Information | |
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Taxon OID | 3300020299 Open in IMG/M |
Scaffold ID | Ga0211615_1001636 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX555923-ERR599016) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2799 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_052 | |||||||
Coordinates | Lat. (o) | -16.9675 | Long. (o) | 53.9199 | Alt. (m) | Depth (m) | 75 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005026 | Metagenome / Metatranscriptome | 414 | Y |
F048247 | Metagenome | 148 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211615_10016362 | F048247 | AGGAGG | MIDRDALFGIGGTLATFSGSLHEVIGVVAGTLTIIFMSFKIWQEIKKKK |
Ga0211615_10016363 | F005026 | GGA | MFELLTLFLTGGGSAAMGSLLKGVFGIINDSRAAKHDMEMARECRNNEFALKFQQSLNNGDGGAFTRATRRMLALIGMGTFSFVTCITTVYPSIPILTSTNLTGEGERSFLFGLFTFPASQTPMVVTTGSISLFSCSVVLPMIIGFYFTPGGRR |
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