NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211513_1000541

Scaffold Ga0211513_1000541


Overview

Basic Information
Taxon OID3300020305 Open in IMG/M
Scaffold IDGa0211513_1000541 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6060
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019665Metagenome / Metatranscriptome228Y
F019666Metagenome / Metatranscriptome228Y
F020709Metagenome / Metatranscriptome222Y
F021511Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0211513_10005411F020709AGGAGMTNIKTQDKTAFGRTLHYVTDPVYADALQTLTGKLTLTDKDIICLQLLGLEVNGVNYTNQLTIAGV
Ga0211513_10005414F021511GGAGMQDYTNDAVKSIMADYTPLEVKALIHNHDESMFVHHQDPKDIVEFYGTYNEDIHHWLLDDSHAFEYYANAMAAYNYAQAKCKCEHERFALQQEYLKDVVYIFIATVCYDLAASHDMLDMTMEEVENYQLAKELQHAKTKLTVIDGGKK
Ga0211513_10005415F019665GGAGGMPFNTYIDDKDMIPVLLSYDWIISHNTWTDCPYPTYAAIKKAYQHNGNATIFGEMM
Ga0211513_10005416F019666GGAGMPHIYIPEVYISQDDYDMIQDNSIPIDAFVAARIRNDEMFVYIQETDCKYKRAQNYEWNDELQARIVSDYFSGNPDKRSTICDI
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Institute for Fundamental Biomedical Research
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