NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211513_1043353

Scaffold Ga0211513_1043353


Overview

Basic Information
Taxon OID3300020305 Open in IMG/M
Scaffold IDGa0211513_1043353 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000263 (ERX556024-ERR599003)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021180Metagenome / Metatranscriptome220N
F099424Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0211513_10433531F021180N/AACTLCNTDHILMMEDDILIRNEIHVPEDWEFAGQAKPGNLLQEPFMEYLTLKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIFDEEFDYIKENLCGNLGWVDVWMPMYYFLCGKNYRHNNLLTETTSNPIWTISKEPIVHQYKVHYE
Ga0211513_10433532F099424AGGMSKITFGYIVGGEDKHYNNLLRSLESLERIEQPYEVVILDADSRLEADEDKPNVRIIPFPVDEAKGEGWFKPHYWQMRYH
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