NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211616_1000009

Scaffold Ga0211616_1000009


Overview

Basic Information
Taxon OID3300020306 Open in IMG/M
Scaffold IDGa0211616_1000009 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36776
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017658Metagenome239Y
F033841Metagenome / Metatranscriptome176N
F070220Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0211616_100000914F033841AGGMEELKPETIKIVTPNPTNFRYSYLVTPDEYKGVRKYKAECLIKKGTITKDEMKREVDAVEHIFGQLEGLLERWKVALKEHYPDRKFSLTKNKHGEPSLPYFLEDDYLVIRTSKKAGGVKQNGDVWTNPPVSFWHTDLTLMTEEEKKEYEKISPALEGQMSIKCSGYDAGANGVGIRCQPLQVIVRKHAEWTGSPDFEAEAQPSYEEKRTASSAADF
Ga0211616_10000097F017658GGAGGMNFMEELEKETQKMLEQISIRKAEKTAVAKKRIAELKELIKLWEQDL
Ga0211616_10000099F070220AGGAGGLKCTKCESLDVKVRETIYRKAELTKGFRNKSITPYVYRRRVCLSCGHRFTTREYTIPDLIAFGKQGYLEMIDDLTPN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.