NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211616_1015477

Scaffold Ga0211616_1015477


Overview

Basic Information
Taxon OID3300020306 Open in IMG/M
Scaffold IDGa0211616_1015477 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1164
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0211616_10154771F006217N/ALLLAMVEEQNPIHKYCMSKHDHWTGRAACVQELRQTQRKMEVERLRQFLKENPHYKYPGMALPNGRIKPLDVCWGSDKTYGTSKERRC
Ga0211616_10154772F029123AGGAGMSYEVWFGKDGKWFGYHSFKHRMDAVRYELRYLKMFPKLTVEIRRREHAS
Ga0211616_10154773F027536AGGAGGMRVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDDEARLHEQEQKLYEKDKEEGVLWVPNF
Ga0211616_10154774F015102N/AMPVNDDDATQDKNTPFDDVSHWAGKLSGKNTDSSKRVDKRSTWRKVKSNFFSKELGVETKRKD
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