NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211616_1018800

Scaffold Ga0211616_1018800


Overview

Basic Information
Taxon OID3300020306 Open in IMG/M
Scaffold IDGa0211616_1018800 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000212 (ERX556014-ERR599098)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1049
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-17.2387Long. (o)53.9775Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0211616_10188002F015102GGAMQKESNNAQDTNTPFDDVTHWVGNLPSEDTDSTQRPIKRYSWWQTKSNILRKKLGVETKRED
Ga0211616_10188003F027536GGAGGMRVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDEEAKLHELEKKLYEQDKEEGMLWVPNF
Ga0211616_10188004F029123N/AMSYEVWFGQNGKWFGYHSFKHKMDAQRYEERYKKVFPNLTVELRRREHAS

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