NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211681_1035790

Scaffold Ga0211681_1035790


Overview

Basic Information
Taxon OID3300020309 Open in IMG/M
Scaffold IDGa0211681_1035790 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)845
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-62.2658Long. (o)-49.1658Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086477Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211681_10357901F086477AGGMTKRGTNGLADGLKEPEEIALTWRQDKLGDGIQLDAECTSVSRRCRNGWGVQLSDGWLTKDITTVAIECHEMTDDTYIGVVGRNYNPQDWNGNLAESKHAVVLHAATGRVYHKGSETSFVLRPLTSGARLIMTIDMQTRELTLELKSSGTADDAPAESTLLLEDIQAEVAACVCLGPGEQNLRIAGCVRSKPEFKLLGKRVKDFWDEENIVPPLQANEGKCDDDPQSLARKMQENLKKVAGFLE

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