NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211515_1017861

Scaffold Ga0211515_1017861


Overview

Basic Information
Taxon OID3300020310 Open in IMG/M
Scaffold IDGa0211515_1017861 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_X000000368 (ERX556067-ERR598950)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1479
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_004
CoordinatesLat. (o)35.5571Long. (o)-6.5586Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040330Metagenome162Y
F040673Metagenome / Metatranscriptome161Y
F097161Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211515_10178614F097161GAGMEKEKQIDDTINVDVYYSFDEETGYYLDRESITDEFMSRLGEIEDDISNLNHERDEHLRTKYMEG
Ga0211515_10178615F040330AGGAGMSNAEKAFDLQEKIAKLIDKLNELGFDYMYYNQISSIRRKRNHGKRKTNR
Ga0211515_10178617F040673N/AEEVDEKAWVNMNTGMITEPDDYTNFWCNCCNDEVRPISYFEFKEKIAEECGGNKEKYHQILDGSRM
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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