NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211628_1006975

Scaffold Ga0211628_1006975


Overview

Basic Information
Taxon OID3300020311 Open in IMG/M
Scaffold IDGa0211628_1006975 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000475 (ERX556071-ERR599171)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2152
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.0263Long. (o)4.6977Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001993Metagenome / Metatranscriptome607Y
F023880Metagenome / Metatranscriptome208Y
F090509Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211628_10069751F023880N/AMKTDHTYAAQMELTNVPEDSLKQWTNMPPISDELYQELVKEFNNERHYFFNDSYILED
Ga0211628_10069752F090509N/AMQLLTRREYNLILRSLDKYAIYMNKKEEELSETLQDKLYYNLYNPKDGVARTEAQLPDLNINLSDLDNVHSMKDYSRD
Ga0211628_10069756F001993N/AMGLLSMNSEQLRYKMKNLDELCPNRSVTNDEQFHELYSKLRDLIEDTNYNIDIVDMYTALHCAMEDFEMYA
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Institute for Fundamental Biomedical Research
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