NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211542_1009751

Scaffold Ga0211542_1009751


Overview

Basic Information
Taxon OID3300020312 Open in IMG/M
Scaffold IDGa0211542_1009751 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2355
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5375Long. (o)70.0244Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004144Metagenome / Metatranscriptome451Y
F007002Metagenome360N

Sequences

Protein IDFamilyRBSSequence
Ga0211542_10097513F004144N/AMRNIIKESIYHLEVETGWTYWYHLKHSFINSSRLIKISFKSIVHGFLPFMWKSDAPKDVIRLYHEIMKIEHIRKMDKLKQLPKNERYNNTTDPIE
Ga0211542_10097514F007002N/AMKDTTTLLTLLNSYGDIVELDWEFDVDTIITELSSNNNWITGPSISAPLGLPLTGSNNLDLKTKDSLEGQFNENLCPSLLEFFKLWNSLAKCHAVNMNAGNFFRLHRDAYKTTQQMRIFIPLNKTELHEWAFIYDKQLAPFKAGKPYLLNTKKQHGSFAFVDDIYHILMGVYINPHNFKVVTDLLPNCRTH
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Institute for Fundamental Biomedical Research
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