NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211542_1017580

Scaffold Ga0211542_1017580


Overview

Basic Information
Taxon OID3300020312 Open in IMG/M
Scaffold IDGa0211542_1017580 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1553
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5375Long. (o)70.0244Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028003Metagenome / Metatranscriptome193Y
F081356Metagenome / Metatranscriptome114N
F085559Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0211542_10175802F085559AGGAGMTMNLQQQSDECGYALEAFAKVLKNNNIEAVGKPHIELIMEYQKEYKKIEIRNQRIENEMNFNFVQSEKTEAYKEWENSWINWSKKKNEH
Ga0211542_10175803F028003N/AMNINQASGFDKYIIMCDKGQNKLASDYQSYLKFKEVQNALVKISQTPGKTYIFNGVTHEKGMTCAQADRVLDNIFNAKTNMEMISLIVKVARQIGFHEITLPRKIRWGM
Ga0211542_10175804F081356GAGGMGNVKEGKYKVVQNYNSVEGALYENEVVQVYDNNTKPGHLRAKDSMGRVWFIPKNYLKKI
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