NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211542_1036093

Scaffold Ga0211542_1036093


Overview

Basic Information
Taxon OID3300020312 Open in IMG/M
Scaffold IDGa0211542_1036093 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)956
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5375Long. (o)70.0244Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036925Metagenome169N

Sequences

Protein IDFamilyRBSSequence
Ga0211542_10360932F036925N/AKDTSLQEEVFIKEYKYPLVETSPDRTEFILELDENIKGGEYRNDFVEMGEMIEYTPISKANMGLIKFDSKKPHILEFDIDPQDRGFTQNMVGGQIVIPNMYKITGEEDTDNSDVVPENTGNGTLQQQLDSGAATDFLDLSNEELIDILLNDPDANERELADGALQERANEQR
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